Just on point A. You can configure the maximum number of conflicts allowed for each folder.
I was running into conflicts with obsidian notes. Reduced the max conflicts on those folder to zero, problem gone.
It’s in the folder specific advanced settings.

I can’t recall specifics, it was a while ago now, but I was having issues with third party apps retrieving any more than a small subset of my music library from Navidrome. I switched to gonic (another subsonic implementation) and it worked right away.